ZHA Liang-ping, LIU Shuang, ZHAO Yu-yang, et al. Identification and Expression Analysis of Arginine Methyltransferase Genes in Ganoderma[J]. Chinese journal of experimental traditional medical formulae, 2016, 22(15): 28-32.
DOI:
ZHA Liang-ping, LIU Shuang, ZHAO Yu-yang, et al. Identification and Expression Analysis of Arginine Methyltransferase Genes in Ganoderma[J]. Chinese journal of experimental traditional medical formulae, 2016, 22(15): 28-32. DOI: 10.13422/j.cnki.syfjx.2016150028.
Identification and Expression Analysis of Arginine Methyltransferase Genes in Ganoderma
Objective: This study was based on data of the transcriptome sequencing of Ganoderma
GLPRMT1
GLPRMT2 and GLPRMT3 were completed in detail by using bioinformatics method. Method: GLPRMT1
GLPRMT2 and GLPRMT3 were analyzed and predicted by the tools of bioinformatics in the following aspects:physical and chemical characteristics of amino acid sequences
function domain
hyophobicity or hydrophilicity
secondary structure and tertiary structure of protein
molecular phylogenetic evolution
and so on;expression levels of GLPRMT1
GLPRMT2 and GLPRMT3 were identified by FPKM from the transcriptome data. Result: Open reading frame finder indicated that GLPRMT1 and GLPRMT2 genes were full-length
while GLPRMT3 was partial;structural domain of GLPRMT1
GLPRMT2 and GLPRMT3 showed high homology with AdoMet-MTases domains;GLPRMT1
GLPRMT2 and GLPRMT3 had relative close relationship to PRMT3 family
PRMT1 family and PRMT5 family of fungus
respectively.From transcriptome data
transcripted level of GLPRMT2 was significantly higher than GLPRMT1 and GLPRMT3
and transcripted level of these three genes have increased significantly in growing periods of Ganoderma. Conclusion: These results provide basis for further understand the function of arginine methyltransferase and epigenetic regulation of Ganoderma.