LIAO Jiang-quan, WANG Jie, LIU Yong-mei, et al. Screen Coronary Heart Disease Blood Stasis Syndrome-related lncRNA-miRNA-mRNA Interaction Network High-throughput Sequencing technology[J]. Chinese journal of experimental traditional medical formulae, 2017, 23(19): 28-33.
LIAO Jiang-quan, WANG Jie, LIU Yong-mei, et al. Screen Coronary Heart Disease Blood Stasis Syndrome-related lncRNA-miRNA-mRNA Interaction Network High-throughput Sequencing technology[J]. Chinese journal of experimental traditional medical formulae, 2017, 23(19): 28-33. DOI: 10.13422/j.cnki.syfjx.2017190028.
Objective: To identify the differentially expressed lncRNA
miRNA and mRNA levels related to coronary heart disease (CHD) blood stasis syndrome
construct the interaction network
and explore the material foundation and mechanism of blood stasis syndrome from the perspective of transcriptomics. Method: The expression levels of lncRNA
miRNA and mRNA in CHD blood stasis syndrome group
non-blood stasis syndrome group and healthy group were detected via high-throughput sequencing technology
and the differentially expressed genes related to CHD blood stasis syndrome were identified by using crosslinking analysis. Functional and pathway enrichment was performed for the obtained differentially expressed genes
and then the interaction network was constructed by Pearson correlation analysis and starBase prediction. Key nodes of interaction network were screened out by tropical analysis. Another cohort was enrolled to verify the key nodes in interaction network with Real-time PCR. Result: The 39 lncRNAs
229 miRNAs and 221 mRNAs were closely related to CHD blood stasis syndrome. Functional and pathway analysis results showed that the differentially expressed genes were majorly correlated to immune and inflammation. A total of 9 lncRNAs (all down-regulated)
31 mRNAs (11 up-regulated and 20 down-regulated) and 24 miRNAs (14 up-regulated and 10 down-regulated) constituted the regulation network
including 76 intergenic relationships. CTA-384D8.35
CTB-114C7.4
RP11-567M16.6 and hsa-miR-3158-3p were the key nodes in CHD blood stasis syndrome interaction network
which was verified by Real-time PCR. Conclusion: CHD blood stasis syndrome has specific lncRNA
miRNA and mRNA expression profiles
closed related to immunity and inflammation; gene-gene interactions exist among differentially expressed genes
and CHD blood stasis syndrome related lncRNA-miRNA-mRNA interaction network can be constructed on this basis.