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1.安徽中医药大学 药学院,合肥 230012
2.中国中医科学院 中药资源中心,北京 100700
张雪艳,在读硕士,从事中药鉴定与分子生药学研究,E-mail:2515101109@qq.com
袁媛,研究员,博士生导师,从事中药鉴定与分子生药学研究,Tel:010-64087649,E-mail:y_yuan0732@163.com
收稿日期:2020-01-13,
网络出版日期:2020-07-23,
纸质出版日期:2020-10-05
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张雪艳,胡启跳,方成武等.SmartRoot在蜜环菌菌索表型谱分析中的应用[J].中国实验方剂学杂志,2020,26(19):23-28.
ZHANG Xue-yan,HU Qi-tiao,FANG Cheng-wu,et al.Application of SmartRoot in Phenotype Profile Analysis of Armillaria gallica[J].Chinese Journal of Experimental Traditional Medical Formulae,2020,26(19):23-28.
张雪艳,胡启跳,方成武等.SmartRoot在蜜环菌菌索表型谱分析中的应用[J].中国实验方剂学杂志,2020,26(19):23-28. DOI: 10.13422/j.cnki.syfjx.20202019.
ZHANG Xue-yan,HU Qi-tiao,FANG Cheng-wu,et al.Application of SmartRoot in Phenotype Profile Analysis of Armillaria gallica[J].Chinese Journal of Experimental Traditional Medical Formulae,2020,26(19):23-28. DOI: 10.13422/j.cnki.syfjx.20202019.
目的
2
建立获取精确的表型谱数据研究平台,是目前中药资源研究亟待解决的技术难点。如传统的蜜环菌菌索表型表征方式多为描述性文字,存在较大的主观性和经验性,亟需一种客观并准确的方法进行蜜环菌菌索表型的表征。
方法
2
基于图像处理软件Image J和根系识别插件SmartRoot与Synbiosis ProtoCol 3影像分析仪相结合,对蜜环菌平板生长图片进行分析,测定蜜环菌菌索长度、生长速度、分枝情况、新生菌索夹角等,建立蜜环菌菌索表型谱分析测量体系。
结果
2
基于该文开发的方法,可以在不影响蜜环菌生长情况下,实时分析蜜环菌菌索的生长长度、生长速度、分枝数、新生菌索夹角等表型谱变化,继代后9~12 d的蜜环菌生长最为迅速,新生菌索与母体菌索之间夹角接近垂直。该方法与传统的蜜环菌生物量表型参数干重呈现一定的相关性,具有较好的实际应用价值。
结论
2
该研究建立了一套客观、准确、快捷和实时的蜜环菌菌索表型谱分析测量体系,拓展了SmartRoot的应用范围,可用于受控实验条件下中药资源的表型谱分析。
Objective
2
To establish a research platform for obtaining accurate phenotypic spectrum data is a technical difficulty that needs to be resolved in the research of traditional Chinese medicine resources. For example,the traditional phenotypic characterization method of
Armillaria
rhizomorph is mostly in a form of descriptive text,which is subjective and empirical. There is an urgent need for an objective and accurate method to characterize the phenotype of honey fungus rhizomorph.
Method
2
Based on the image processing software Image J and the root identification plug-in SmartRoot combined with the Synbiosis ProtoCol 3 image analyzer,the growth picture of
Armillaria
spp. was analyzed,and the length,growth rate,branching situation,and angle of nascent rhizomorph of
Armillaria gallica
were measured to establish a measurement system for the phenotypic analysis of
Armillaria
rhizomorph.
Result
2
Based on the method developed in this paper,the growth length,growth rate,number of branches,angle of nascent rhizomorph,and other phenotypic changes can be analyzed in a real-time manner without affecting the growth of
Armillaria gallica
.
Armillaria
spp. grew fastest at 9-12 days after generation,and the angle between the nascent rhizomorph and the parent rhizomorph was nearly vertical. This method had a certain correlation with the dry weight of traditional
Armillaria
biomass phenotypic parameters,with a high value in practical application.
Conclusion
2
This study has established an objective,accurate,fast and real-time phenotypic analysis and measurement system for
Armillaria
rhizomorph,which expands the scope of application of SmartRoot and can be used for phenotypic analysis of traditional Chinese medicine resources under controlled experimental conditions.
周济 , FRANCOIS T , TONY P , 等 . 植物表型组学:发展、现状与挑战 [J]. 南京农业大学学报 , 2018 , 41 ( 4 ): 580 - 588 .
赵春江 . 植物表型组学大数据及其研究进展 [J]. 农业大数据学报 , 2019 , 1 ( 2 ): 5 - 18 .
王璟璐 , 张颖 , 潘晓迪 , 等 . 作物表型组数据库研究进展及展望 [J]. 中国农业信息 , 2018 , 30 ( 5 ): 13 - 23 .
杨有新 , 杨泽茂 , 吴才君 , 等 . 植物表型组学研究进展 [J]. 江西农业大学学报 , 2015 , 37 ( 6 ): 1105 - 1112 .
潘映红 . 论植物表型组和植物表型组学的概念与范畴 [J]. 作物学报 , 2015 , 41 ( 2 ): 175 - 186 .
NAIK H S , ZHANG J , LOFQUIST A , et al . A real-time phenotyping framework using machine learning for plant stress severity rating in soybean [J]. Plant Methods , 2017 , 13 ( 23 ): 1 - 12 .
LOBET G , PAGÈS L . A novel image-analysis toolbox enabling quantitative analysis of root system architecture [J]. Plant Physiol , 2011 , 157 ( 1 ): 29 - 39 .
刘季 , 安锋 , 袁坤 , 等 . 运用SmartRoot测量橡胶树细根 [J]. 植物生态学报 , 2013 , 37 ( 8 ): 786 - 792 .
韩毅强 , 石英 , 巩海仁 , 等 . SmartRoot在大豆根系形态指标测定上的应用 [J]. 安徽农学通报 , 2017 , 23 ( 5 ): 43 - 46 .
柳玲玲 , 秦松 , 朱国胜 , 等 . 猪苓与蜜环菌共生体系的研究进展 [J]. 湖北农业科学 , 2012 , 51 ( 4 ): 655 - 659 .
秦国夫 , 赵俊 , 郭文辉 , 等 . 蜜环菌的生物学研究进展 [J]. 东北林业大学学报 , 2004 , 32 ( 6 ): 89 - 94 .
YUAN Y , JIN X , LIU J , et al . The Gastrodia elata genome provides insights into plant adaptation to heterotrophy [J]. Nat Communicat , 2018 , 9 ( 1 ): 1615 .
梁宇庭 , 蒋超 , 袁媛 , 等 . 高卢蜜环菌PCR-RFLP快速鉴别方法研究 [J]. 中国中药杂志 , 2019 , 44 ( 17 ): 3622 - 3626 .
周骏辉 , 袁媛 , 梁宇庭 , 等 . 蜜环菌遗传转化体系的建立 [J]. 中药材 , 2017 , 40 ( 8 ): 1770 - 1772 .
LOBET G , PAGÈS L , DRAYE X , et al . A novel image-analysis toolbox enabling quantitative analysis of root system architecture [J]. Plant Physiol , 2011 , 157 ( 1 ): 29 - 39 .
李宏 , 韦晓兰 . 表型组学:解析基因型-表型关系的科学 [J]. 生物技术通报 , 2013 ( 7 ): 41 - 47 .
胡伟娟 , 傅向东 , 陈凡 , 等 . 新一代植物表型组学的发展之路 [J]. 植物学报 , 2019 , 54 ( 5 ): 558 - 568 .
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